miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|91727325|gb|EB364207.1|EB364207 CCCACAGCGTAGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGAGTTTTCCGAGAGATAAGTTGATCAAGATGTCCAGTGA
TAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCCAGCCGCTCCAG
AGCCTGAAGAGCAAGAAGAAAGGAAACCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCAAAACCACTGCTAAG
TTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACCCTCGATCCTCCTCCTAACTGCAGTGCTGGGCC
TAAAGGAGATAACATTTATGAATGGAGATCAACTATACTTGGTCCACCAGGTTCTGTATATGAAGGTGGTGTGTTTTTTC
TGGATATCACATTTTCATCAGATTATCCATTTAAGCCACCAAAGGTTACTTTTCGTACCAGAATCTATCACTGCAACATC
AACAGTCAGGGAGTCATCTGTCTGGATATCCTTAAAGACAACTGGAGTCCTGCTTTGACTATTTCAAAGGTTTTGCTGTC
TATTTGTTCCCTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTGGAAGCATAGCCACTCAGTATTTGACCAACAGAG
CAGAACATGACAGGATAGCCAGACAGTGGACCAAGAGATACGCAACATAACTCACACGATGTGTATGCAGTGTGAAGGGG
C




Most similar to sp|P52483|UB2E3_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P52483|UB2E3_MOUSE Ubiquitin-conjugating enzyme E2 E3 OS=Mus
           musculus GN=Ube2e3 PE=1 SV=2
          Length = 207

 Score =  310 bits (795), Expect = 5e-84
 Identities = 159/207 (76%), Positives = 159/207 (76%), Gaps = 1/207 (0%)
 Frame = +1

Query: 70  MSSDRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKP-ATQQKKNXXXXXXXXXXXX 246
           MSSDRQR                               KP ATQQKKN            
Sbjct: 1   MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS 60

Query: 247 XXXXRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 426
               RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY
Sbjct: 61  TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 120

Query: 427 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 606
           PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV
Sbjct: 121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 180

Query: 607 GSIATQYLTNRAEHDRIARQWTKRYAT 687
           GSIATQYLTNRAEHDRIARQWTKRYAT
Sbjct: 181 GSIATQYLTNRAEHDRIARQWTKRYAT 207